I only play scenarios with U.S., British and German units so I just pick out which mods I like out of the ones that come with batch files, dump the rest, back-up those and all other mods on a zip disk. I've got several dirctories like Allied vehicles, German vehicles, Terrain, Buildings and Objects, Uniforms, Sounds etc.. When a new mod comes along I unzip it, compare it to what I've already got, if I like it I'll just throw it in the appropriate directory and zip it up with the rest.
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"Stupid people shouldn't breed" - Skatenigs